Posts by Collection

portfolio

Colorful Corvallis

Published:

Blooming Beauties: colored memories I can not ever leave behind!!

projects

NL2SQL: LLM-Powered Natural Language to Database Query Engine

Published:

Multi-stage LLM pipeline achieving 91% accuracy that converts plain-English questions into optimized SQL queries, cutting query fulfillment from days to under 3 seconds. Built during AI/ML internship at Seagate Technology.

C-Star: Predicting unresolved variables in dynamical systems

Published:

Universal Dynamic Equations (UDEs) that uncover hidden drivers of ecosystem collapse from observable data alone—delivering superior early-warning capability for regime shifts with less data than conventional methods.

publications

A Simple Method of Solution For Multi-label Feature Selection

Published in IEEE International Conference on Electrical, Computer and Communication Technologies, 2019

The study proposes a two-step algorithm for multi-label classification (MLC). It first decomposes the output label space into lower dimensions, then applies feature selection in the reduced space. This approach efficiently handles high-dimensional datasets and reduces computational load.

Recommended citation: Valadi, Jayaraman K., Prasad T. Ovhal, and Kunal J. Rathore. "A simple method of solution for multi-label feature selection." 2019 IEEE International Conference on Electrical, Computer and Communication Technologies (ICECCT). IEEE, 2019. https://ieeexplore.ieee.org/document/8869493

RA2Vec: Distributed Representation of Protein Sequences with Reduced Alphabet Embeddings

Published in Proceedings of the 11th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics (ACM-BCB 2020), 2020

Protein function identification has become an important task due to the rapid growth of sequenced genomes. This work introduces RA2Vec (Reduced Alphabets to Vectors), a novel approach for protein sequence representation that combines reduced amino acid alphabets with Word2Vec-style embeddings. We map protein sequences to reduced alphabets based on hydropathy and conformational similarity, then apply skip-gram models to create distributed vector representations that capture both biochemical properties and sequential context.

Recommended citation: Wijesekara, R. Y., Lahorkar, A., Rathore, K., & Valadi, J. K. (2020). RA2Vec: Distributed representation of protein sequences with reduced alphabet embeddings. In Proceedings of the 11th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics (pp. 1-1). https://dl.acm.org/doi/10.1145/3388440.3414925

Generating Part-based Global Explnations via Correspondence

Published in IJCAI 2024 Workshop on Explainable Artificial Intelligence (XAI), 2024

Deep learning models are notoriously opaque. Existing explanation methods often focus on localized visual explanations for individual images. Concept-based explanations, while offering global insights, require extensive annotations, incurring significant labeling cost. We propose an approach that leverages user-defined part labels from a limited set of images and efficiently transfers them to a larger dataset. This enables the generation of global symbolic explanations by aggregating part-based local explanations, ultimately providing human-understandable explanations for model decisions on a large scale.

Recommended citation: Rathore, K., & Tadepalli, P. (2025). Generating Part-Based Global Explanations Via Correspondence. arXiv preprint arXiv:2509.15393. https://drive.google.com/file/d/1_1LySYzjUUow22PV4M9FScRstdFIzk89/view

Predicting Unobserved Driver of Regime Shifts in Social-Ecological Systems with Universal Dynamic Equations

Published in EcoEvo Arxiv, 2025

Ecosystems around the world are anticipated to undergo regime shifts as temperatures rise and other climatic and anthropogenic perturbations erode resilience. Forecasting these nonlinear ecosystem dynamics can help stakeholders prepare for rapid changes. One major challenge is that regime shifts can be difficult to predict when driven by unobserved factors—such as illegal fishing from a fishery or unreported poaching in a game reserve. This paper advances scientific machine learning methods, specifically universal dynamic equations (UDEs), to identify changes in an unobserved bifurcation parameter and predict ecosystem regime shifts.

Recommended citation: Rathore, K. J., Buckner, J. H., Meunier, Z. D., Esquivel, J. A., & Watson, J. R. (2025). Predicting unobserved driver of regime shifts in social-ecological systems with universal dynamic equations. https://ecoevorxiv.org/repository/view/11165/

talks

Poster: Explanations via Minimal regions and Semantic Correspondence

Published:

The objective of this poster presentation was to articulate our research endeavors in the realm of Explainable Artificial Intelligence to industry professionals, and to illustrate potential applications thereof. The central premise was to underscore the importance of generating human-comprehensible and interpretable explanations through sub-symbolic representations of images, such as components of an object within an image, which serve as inputs to a Deep Neural Network (DNN) model.

Poster: Discriminative Global Explanations via Part Attributes

Published:

This poster presentation served as a platform for me to articulate our research concepts and advancements in the field of Explainable Artificial Intelligence to industry professionals. Subsequently, I elaborated on the discriminative global explanations and the methodology we are employing to generate such explanations, along with their potential benefits to the industry.

XAI@IJCAI: Generating Part-Based Global Explanations Via Correspondence

Published:

We proposed a methodology for generating global explanations using correspondence techniques. The focus was on delivering human-comprehensible verbal explanations, articulated as part-based expressions, derived from the input image to the Deep Neural Network classifier.

teaching

Teaching experience 1

Undergraduate course, University 1, Department, 2014

This is a description of a teaching experience. You can use markdown like any other post.

Teaching experience 2

Workshop, University 1, Department, 2015

This is a description of a teaching experience. You can use markdown like any other post.